2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update
Identifieur interne : 001343 ( Main/Exploration ); précédent : 001342; suivant : 0013442017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update
Auteurs : Jill Trewhella [Australie] ; Anthony P. Duff [Australie] ; Dominique Durand [France] ; Frank Gabel [France] ; J. Mitchell Guss [Australie] ; Wayne A. Hendrickson [États-Unis] ; Greg L. Hura [États-Unis] ; David A. Jacques [Australie] ; Nigel M. Kirby [Australie] ; Ann H. Kwan [Australie] ; Javier Pérez [France] ; Lois Pollack [États-Unis] ; Timothy M. Ryan [Australie] ; Andrej Sali [États-Unis] ; Dina Schneidman-Duhovny [Israël] ; Torsten Schwede [Suisse] ; Dmitri I. Svergun [Allemagne] ; Masaaki Sugiyama [Japon] ; John A. Tainer [États-Unis] ; Patrice Vachette [France] ; John Westbrook [États-Unis] ; Andrew E. Whitten [Australie]Source :
- Acta Crystallographica. Section D, Structural Biology [ 2059-7983 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : DNA, Proteins, RNA.
- Animals, Databases, Protein, Editorial Policies, Humans, Models, Molecular, Scattering, Small Angle, X-Ray Diffraction.
Abstract
Updated guidelines are presented for publishing biomolecular small-angle scattering (SAS) experiments so that readers can independently assess the quality of the data and models presented. The focus is on solution scattering experiments with either X-rays (SAXS) or neutrons (SANS), where the primary goal is the generation and testing of three-dimensional models, particularly in the context of integrative/hybrid structural modelling.
Url:
DOI: 10.1107/S2059798317011597
PubMed: 28876235
PubMed Central: 5586245
Affiliations:
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Kwan</name><affiliation wicri:level="1"><nlm:aff id="a">School of Life and Environmental Sciences,<institution>The University of Sydney</institution>, NSW 2006,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Perez, Javier" sort="Perez, Javier" uniqKey="Perez J" first="Javier" last="Pérez">Javier Pérez</name><affiliation wicri:level="1"><nlm:aff id="i"><institution>Synchrotron SOLEIL</institution>, L’Orme des Merisiers, Saint-Aubin BP48, 91192 Gif-sur-Yvette CEDEX,<country>France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Pollack, Lois" sort="Pollack, Lois" uniqKey="Pollack L" first="Lois" last="Pollack">Lois Pollack</name><affiliation wicri:level="1"><nlm:aff id="j">School of Applied and Engineering Physics,<institution>Cornell University</institution>, Ithaca, NY 14853-2501,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ryan, Timothy M" sort="Ryan, Timothy M" uniqKey="Ryan T" first="Timothy M." last="Ryan">Timothy M. 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Duff</name><affiliation wicri:level="1"><nlm:aff id="b"><institution>ANSTO</institution>, New Illawarra Road, Lucas Heights, NSW 2234,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Durand, Dominique" sort="Durand, Dominique" uniqKey="Durand D" first="Dominique" last="Durand">Dominique Durand</name><affiliation wicri:level="1"><nlm:aff id="c">Institut de Biologie Intégrative de la Cellule, UMR 9198, Bâtiment 430,<institution>Université Paris-Sud</institution>, 91405 Orsay CEDEX,<country>France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Gabel, Frank" sort="Gabel, Frank" uniqKey="Gabel F" first="Frank" last="Gabel">Frank Gabel</name><affiliation wicri:level="1"><nlm:aff id="d"><institution>Université Grenoble Alpes, Commissariat à l’Energie Atomique (CEA), Centre National de la Recherche Scientifique (CNRS), Institut de Biologie Structurale (IBS), and Institut Laue–Langevin</institution>, 71 Avenue des Martyrs, 38000 Grenoble,<country>France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Guss, J Mitchell" sort="Guss, J Mitchell" uniqKey="Guss J" first="J. Mitchell" last="Guss">J. Mitchell Guss</name><affiliation wicri:level="1"><nlm:aff id="a">School of Life and Environmental Sciences,<institution>The University of Sydney</institution>, NSW 2006,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hendrickson, Wayne A" sort="Hendrickson, Wayne A" uniqKey="Hendrickson W" first="Wayne A." last="Hendrickson">Wayne A. Hendrickson</name><affiliation wicri:level="1"><nlm:aff id="e">Department of Biochemistry and Molecular Biophysics,<institution>Columbia University</institution>, New York, NY 10032,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Hura, Greg L" sort="Hura, Greg L" uniqKey="Hura G" first="Greg L." last="Hura">Greg L. Hura</name><affiliation wicri:level="1"><nlm:aff id="f">Molecular Biophysics and Integrated Bioimaging,<institution>Lawrence Berkeley National Laboratory</institution>, Berkeley, CA 94720,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Jacques, David A" sort="Jacques, David A" uniqKey="Jacques D" first="David A." last="Jacques">David A. Jacques</name><affiliation wicri:level="1"><nlm:aff id="g"><institution>University of Technology Sydney</institution>, ithree Institute, 15 Broadway, Ultimo, NSW 2007,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Kirby, Nigel M" sort="Kirby, Nigel M" uniqKey="Kirby N" first="Nigel M." last="Kirby">Nigel M. Kirby</name><affiliation wicri:level="1"><nlm:aff id="h"><institution>Australian Synchrotron</institution>, 800 Blackburn Road, Clayton, VIC 3168,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Kwan, Ann H" sort="Kwan, Ann H" uniqKey="Kwan A" first="Ann H." last="Kwan">Ann H. Kwan</name><affiliation wicri:level="1"><nlm:aff id="a">School of Life and Environmental Sciences,<institution>The University of Sydney</institution>, NSW 2006,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Perez, Javier" sort="Perez, Javier" uniqKey="Perez J" first="Javier" last="Pérez">Javier Pérez</name><affiliation wicri:level="1"><nlm:aff id="i"><institution>Synchrotron SOLEIL</institution>, L’Orme des Merisiers, Saint-Aubin BP48, 91192 Gif-sur-Yvette CEDEX,<country>France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Pollack, Lois" sort="Pollack, Lois" uniqKey="Pollack L" first="Lois" last="Pollack">Lois Pollack</name><affiliation wicri:level="1"><nlm:aff id="j">School of Applied and Engineering Physics,<institution>Cornell University</institution>, Ithaca, NY 14853-2501,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Ryan, Timothy M" sort="Ryan, Timothy M" uniqKey="Ryan T" first="Timothy M." last="Ryan">Timothy M. Ryan</name><affiliation wicri:level="1"><nlm:aff id="h"><institution>Australian Synchrotron</institution>, 800 Blackburn Road, Clayton, VIC 3168,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sali, Andrej" sort="Sali, Andrej" uniqKey="Sali A" first="Andrej" last="Sali">Andrej Sali</name><affiliation wicri:level="1"><nlm:aff id="k">Department of Bioengineering and Therapeutic Sciences, Department of Pharmaceutical Chemistry, and California Institute for Quantitative Biosciences (QB3),<institution>University of California San Francisco</institution>, San Francisco, California,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Schneidman Duhovny, Dina" sort="Schneidman Duhovny, Dina" uniqKey="Schneidman Duhovny D" first="Dina" last="Schneidman-Duhovny">Dina Schneidman-Duhovny</name><affiliation wicri:level="1"><nlm:aff id="l">School of Computer Science and Engineering, Institute of Life Sciences,<institution>The Hebrew University of Jerusalem</institution>, Jerusalem 9190401,<country>Israel</country></nlm:aff><country xml:lang="fr">Israël</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Schwede, Torsten" sort="Schwede, Torsten" uniqKey="Schwede T" first="Torsten" last="Schwede">Torsten Schwede</name><affiliation wicri:level="1"><nlm:aff id="m">Biozentrum,<institution>University of Basel and SIB Swiss Institute of Bioinformatics</institution>, Basel,<country>Switzerland</country></nlm:aff><country xml:lang="fr">Suisse</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Svergun, Dmitri I" sort="Svergun, Dmitri I" uniqKey="Svergun D" first="Dmitri I." last="Svergun">Dmitri I. Svergun</name><affiliation wicri:level="1"><nlm:aff id="n"><institution>European Molecular Biology Laboratory (EMBL) Hamburg</institution>, c/o DESY, Nokestrasse 85, 22607 Hamburg,<country>Germany</country></nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Sugiyama, Masaaki" sort="Sugiyama, Masaaki" uniqKey="Sugiyama M" first="Masaaki" last="Sugiyama">Masaaki Sugiyama</name><affiliation wicri:level="1"><nlm:aff id="o">Research Reactor Institute,<institution>Kyoto University</institution>, Kumatori, Sennan-gun, Osaka 590-0494,<country>Japan</country></nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Tainer, John A" sort="Tainer, John A" uniqKey="Tainer J" first="John A." last="Tainer">John A. Tainer</name><affiliation wicri:level="1"><nlm:aff id="p">Basic Science Research Division, Molecular and Cellular Oncology,<institution>MD Anderson Cancer Center</institution>, University of Texas, Houston, Texas,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Vachette, Patrice" sort="Vachette, Patrice" uniqKey="Vachette P" first="Patrice" last="Vachette">Patrice Vachette</name><affiliation wicri:level="1"><nlm:aff id="c">Institut de Biologie Intégrative de la Cellule, UMR 9198, Bâtiment 430,<institution>Université Paris-Sud</institution>, 91405 Orsay CEDEX,<country>France</country></nlm:aff><country xml:lang="fr">France</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Westbrook, John" sort="Westbrook, John" uniqKey="Westbrook J" first="John" last="Westbrook">John Westbrook</name><affiliation wicri:level="1"><nlm:aff id="q">Department of Chemistry and Chemical Biology,<institution>Rutgers University</institution>, New Brunswick, NJ 07102,<country>USA</country></nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author><author><name sortKey="Whitten, Andrew E" sort="Whitten, Andrew E" uniqKey="Whitten A" first="Andrew E." last="Whitten">Andrew E. Whitten</name><affiliation wicri:level="1"><nlm:aff id="b"><institution>ANSTO</institution>, New Illawarra Road, Lucas Heights, NSW 2234,<country>Australia</country></nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea># see nlm:aff country strict</wicri:regionArea></affiliation></author></analytic><series><title level="j">Acta Crystallographica. Section D, Structural Biology</title><idno type="eISSN">2059-7983</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>DNA (chemistry)</term><term>Databases, Protein</term><term>Editorial Policies</term><term>Humans</term><term>Models, Molecular</term><term>Proteins (chemistry)</term><term>RNA (chemistry)</term><term>Scattering, Small Angle</term><term>X-Ray Diffraction</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN ()</term><term>ARN ()</term><term>Animaux</term><term>Bases de données de protéines</term><term>Diffraction des rayons X</term><term>Diffusion aux petits angles</term><term>Humains</term><term>Modèles moléculaires</term><term>Politiques éditoriales</term><term>Protéines ()</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA</term><term>Proteins</term><term>RNA</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Databases, Protein</term><term>Editorial Policies</term><term>Humans</term><term>Models, Molecular</term><term>Scattering, Small Angle</term><term>X-Ray Diffraction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>ADN</term><term>ARN</term><term>Animaux</term><term>Bases de données de protéines</term><term>Diffraction des rayons X</term><term>Diffusion aux petits angles</term><term>Humains</term><term>Modèles moléculaires</term><term>Politiques éditoriales</term><term>Protéines</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Updated guidelines are presented for publishing biomolecular small-angle scattering (SAS) experiments so that readers can independently assess the quality of the data and models presented. The focus is on solution scattering experiments with either X-rays (SAXS) or neutrons (SANS), where the primary goal is the generation and testing of three-dimensional models, particularly in the context of integrative/hybrid structural modelling.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Australie</li><li>France</li><li>Israël</li><li>Japon</li><li>Suisse</li><li>États-Unis</li></country></list><tree><country name="Australie"><noRegion><name sortKey="Trewhella, Jill" sort="Trewhella, Jill" uniqKey="Trewhella J" first="Jill" last="Trewhella">Jill Trewhella</name></noRegion><name sortKey="Duff, Anthony P" sort="Duff, Anthony P" uniqKey="Duff A" first="Anthony P." last="Duff">Anthony P. Duff</name><name sortKey="Guss, J Mitchell" sort="Guss, J Mitchell" uniqKey="Guss J" first="J. Mitchell" last="Guss">J. Mitchell Guss</name><name sortKey="Jacques, David A" sort="Jacques, David A" uniqKey="Jacques D" first="David A." last="Jacques">David A. Jacques</name><name sortKey="Kirby, Nigel M" sort="Kirby, Nigel M" uniqKey="Kirby N" first="Nigel M." last="Kirby">Nigel M. Kirby</name><name sortKey="Kwan, Ann H" sort="Kwan, Ann H" uniqKey="Kwan A" first="Ann H." last="Kwan">Ann H. Kwan</name><name sortKey="Ryan, Timothy M" sort="Ryan, Timothy M" uniqKey="Ryan T" first="Timothy M." last="Ryan">Timothy M. Ryan</name><name sortKey="Whitten, Andrew E" sort="Whitten, Andrew E" uniqKey="Whitten A" first="Andrew E." last="Whitten">Andrew E. Whitten</name></country><country name="France"><noRegion><name sortKey="Durand, Dominique" sort="Durand, Dominique" uniqKey="Durand D" first="Dominique" last="Durand">Dominique Durand</name></noRegion><name sortKey="Gabel, Frank" sort="Gabel, Frank" uniqKey="Gabel F" first="Frank" last="Gabel">Frank Gabel</name><name sortKey="Perez, Javier" sort="Perez, Javier" uniqKey="Perez J" first="Javier" last="Pérez">Javier Pérez</name><name sortKey="Vachette, Patrice" sort="Vachette, Patrice" uniqKey="Vachette P" first="Patrice" last="Vachette">Patrice Vachette</name></country><country name="États-Unis"><noRegion><name sortKey="Hendrickson, Wayne A" sort="Hendrickson, Wayne A" uniqKey="Hendrickson W" first="Wayne A." last="Hendrickson">Wayne A. Hendrickson</name></noRegion><name sortKey="Hura, Greg L" sort="Hura, Greg L" uniqKey="Hura G" first="Greg L." last="Hura">Greg L. Hura</name><name sortKey="Pollack, Lois" sort="Pollack, Lois" uniqKey="Pollack L" first="Lois" last="Pollack">Lois Pollack</name><name sortKey="Sali, Andrej" sort="Sali, Andrej" uniqKey="Sali A" first="Andrej" last="Sali">Andrej Sali</name><name sortKey="Tainer, John A" sort="Tainer, John A" uniqKey="Tainer J" first="John A." last="Tainer">John A. Tainer</name><name sortKey="Westbrook, John" sort="Westbrook, John" uniqKey="Westbrook J" first="John" last="Westbrook">John Westbrook</name></country><country name="Israël"><noRegion><name sortKey="Schneidman Duhovny, Dina" sort="Schneidman Duhovny, Dina" uniqKey="Schneidman Duhovny D" first="Dina" last="Schneidman-Duhovny">Dina Schneidman-Duhovny</name></noRegion></country><country name="Suisse"><noRegion><name sortKey="Schwede, Torsten" sort="Schwede, Torsten" uniqKey="Schwede T" first="Torsten" last="Schwede">Torsten Schwede</name></noRegion></country><country name="Allemagne"><noRegion><name sortKey="Svergun, Dmitri I" sort="Svergun, Dmitri I" uniqKey="Svergun D" first="Dmitri I." last="Svergun">Dmitri I. Svergun</name></noRegion></country><country name="Japon"><noRegion><name sortKey="Sugiyama, Masaaki" sort="Sugiyama, Masaaki" uniqKey="Sugiyama M" first="Masaaki" last="Sugiyama">Masaaki Sugiyama</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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